The application of natural language processing (NLP) to cancer pathology reports has been focused on detecting cancer cases, largely ignoring precancerous cases. Improving the characterization of precancerous adenomas assists in developing diagnostic tests for early cancer detection and prevention, especially for colorectal cancer (CRC). Here we developed transformer-based deep neural network NLP models to perform the CRC phenotyping, with the goal of extracting precancerous lesion attributes and distinguishing cancer and precancerous cases. We achieved 0.914 macro-F1 scores for classifying patients into negative, non-advanced adenoma, advanced adenoma and CRC. We further improved the performance to 0.923 using an ensemble of classifiers for cancer status classification and lesion size named entity recognition (NER). Our results demonstrated the potential of using NLP to leverage real-world health record data to facilitate the development of diagnostic tests for early cancer prevention.
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View-dependent effects such as reflections pose a substantial challenge for image-based and neural rendering algorithms. Above all, curved reflectors are particularly hard, as they lead to highly non-linear reflection flows as the camera moves. We introduce a new point-based representation to compute Neural Point Catacaustics allowing novel-view synthesis of scenes with curved reflectors, from a set of casually-captured input photos. At the core of our method is a neural warp field that models catacaustic trajectories of reflections, so complex specular effects can be rendered using efficient point splatting in conjunction with a neural renderer. One of our key contributions is the explicit representation of reflections with a reflection point cloud which is displaced by the neural warp field, and a primary point cloud which is optimized to represent the rest of the scene. After a short manual annotation step, our approach allows interactive high-quality renderings of novel views with accurate reflection flow. Additionally, the explicit representation of reflection flow supports several forms of scene manipulation in captured scenes, such as reflection editing, cloning of specular objects, reflection tracking across views, and comfortable stereo viewing. We provide the source code and other supplemental material on https://repo-sam.inria.fr/ fungraph/neural_catacaustics/
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Edge computing is changing the face of many industries and services. Common edge computing models offload computing which is prone to security risks and privacy violation. However, advances in deep learning enabled Internet of Things (IoTs) to take decisions and run cognitive tasks locally. This research introduces a decentralized-control edge model where most computation and decisions are moved to the IoT level. The model aims at decreasing communication to the edge which in return enhances efficiency and decreases latency. The model also avoids data transfer which raises security and privacy risks. To examine the model, we developed SAFEMYRIDES, a scene-aware ridesharing monitoring system where smart phones are detecting violations at the runtime. Current real-time monitoring systems are costly and require continuous network connectivity. The system uses optimized deep learning that run locally on IoTs to detect violations in ridesharing and record violation incidences. The system would enhance safety and security in ridesharing without violating privacy.
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Cognitive Computing (COC) aims to build highly cognitive machines with low computational resources that respond in real-time. However, scholarly literature shows varying research areas and various interpretations of COC. This calls for a cohesive architecture that delineates the nature of COC. We argue that if Herbert Simon considered the design science is the science of artificial, cognitive systems are the products of cognitive science or 'the newest science of the artificial'. Therefore, building a conceptual basis for COC is an essential step into prospective cognitive computing-based systems. This paper proposes an architecture of COC through analyzing the literature on COC using a myriad of statistical analysis methods. Then, we compare the statistical analysis results with previous qualitative analysis results to confirm our findings. The study also comprehensively surveys the recent research on COC to identify the state of the art and connect the advances in varied research disciplines in COC. The study found that there are three underlaying computing paradigms, Von-Neuman, Neuromorphic Engineering and Quantum Computing, that comprehensively complement the structure of cognitive computation. The research discuss possible applications and open research directions under the COC umbrella.
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Reading comprehension of legal text can be a particularly challenging task due to the length and complexity of legal clauses and a shortage of expert-annotated datasets. To address this challenge, we introduce the Merger Agreement Understanding Dataset (MAUD), an expert-annotated reading comprehension dataset based on the American Bar Association's 2021 Public Target Deal Points Study, with over 39,000 examples and over 47,000 total annotations. Our fine-tuned Transformer baselines show promising results, with models performing well above random on most questions. However, on a large subset of questions, there is still room for significant improvement. As the only expert-annotated merger agreement dataset, MAUD is valuable as a benchmark for both the legal profession and the NLP community.
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The application of deep learning algorithms to financial data is difficult due to heavy non-stationarities which can lead to over-fitted models that underperform under regime changes. Using the Numerai tournament data set as a motivating example, we propose a machine learning pipeline for trading market-neutral stock portfolios based on tabular data which is robust under changes in market conditions. We evaluate various machine-learning models, including Gradient Boosting Decision Trees (GBDTs) and Neural Networks with and without simple feature engineering, as the building blocks for the pipeline. We find that GBDT models with dropout display high performance, robustness and generalisability with relatively low complexity and reduced computational cost. We then show that online learning techniques can be used in post-prediction processing to enhance the results. In particular, dynamic feature neutralisation, an efficient procedure that requires no retraining of models and can be applied post-prediction to any machine learning model, improves robustness by reducing drawdown in volatile market conditions. Furthermore, we demonstrate that the creation of model ensembles through dynamic model selection based on recent model performance leads to improved performance over baseline by improving the Sharpe and Calmar ratios. We also evaluate the robustness of our pipeline across different data splits and random seeds with good reproducibility of results.
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In this work, we address the problem of unsupervised moving object segmentation (MOS) in 4D LiDAR data recorded from a stationary sensor, where no ground truth annotations are involved. Deep learning-based state-of-the-art methods for LiDAR MOS strongly depend on annotated ground truth data, which is expensive to obtain and scarce in existence. To close this gap in the stationary setting, we propose a novel 4D LiDAR representation based on multivariate time series that relaxes the problem of unsupervised MOS to a time series clustering problem. More specifically, we propose modeling the change in occupancy of a voxel by a multivariate occupancy time series (MOTS), which captures spatio-temporal occupancy changes on the voxel level and its surrounding neighborhood. To perform unsupervised MOS, we train a neural network in a self-supervised manner to encode MOTS into voxel-level feature representations, which can be partitioned by a clustering algorithm into moving or stationary. Experiments on stationary scenes from the Raw KITTI dataset show that our fully unsupervised approach achieves performance that is comparable to that of supervised state-of-the-art approaches.
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Automated text analysis has become a widely used tool in political science. In this research, we use a BERT model trained on German party manifestos to identify the individual parties' contribution to the coalition agreement of 2021.
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When testing conditions differ from those represented in training data, so-called out-of-distribution (OOD) inputs can mar the reliability of black-box learned components in the modern robot autonomy stack. Therefore, coping with OOD data is an important challenge on the path towards trustworthy learning-enabled open-world autonomy. In this paper, we aim to demystify the topic of OOD data and its associated challenges in the context of data-driven robotic systems, drawing connections to emerging paradigms in the ML community that study the effect of OOD data on learned models in isolation. We argue that as roboticists, we should reason about the overall system-level competence of a robot as it performs tasks in OOD conditions. We highlight key research questions around this system-level view of OOD problems to guide future research toward safe and reliable learning-enabled autonomy.
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State space models (SSMs) have demonstrated state-of-the-art sequence modeling performance in some modalities, but underperform attention in language modeling. Moreover, despite scaling nearly linearly in sequence length instead of quadratically, SSMs are still slower than Transformers due to poor hardware utilization. In this paper, we make progress on understanding the expressivity gap between SSMs and attention in language modeling, and on reducing the hardware barrier between SSMs and attention. First, we use synthetic language modeling tasks to understand the gap between SSMs and attention. We find that existing SSMs struggle with two capabilities: recalling earlier tokens in the sequence and comparing tokens across the sequence. To understand the impact on language modeling, we propose a new SSM layer, H3, that is explicitly designed for these abilities. H3 matches attention on the synthetic languages and comes within 0.4 PPL of Transformers on OpenWebText. Furthermore, a hybrid 125M-parameter H3-attention model that retains two attention layers surprisingly outperforms Transformers on OpenWebText by 1.0 PPL. Next, to improve the efficiency of training SSMs on modern hardware, we propose FlashConv. FlashConv uses a fused block FFT algorithm to improve efficiency on sequences up to 8K, and introduces a novel state passing algorithm that exploits the recurrent properties of SSMs to scale to longer sequences. FlashConv yields 2$\times$ speedup on the long-range arena benchmark and allows hybrid language models to generate text 1.6$\times$ faster than Transformers. Using FlashConv, we scale hybrid H3-attention language models up to 1.3B parameters on the Pile and find promising initial results, achieving lower perplexity than Transformers and outperforming Transformers in zero- and few-shot learning on a majority of tasks in the SuperGLUE benchmark.
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